Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926003.1_cds_XP_016474122.1_66181
CDS Infomation

[gene=LOC107795931] [db_xref=GeneID:107795931] [protein=RNA polymerase sigma factor sigA-like] [protein_id=XP_016474122.1] [location=join(141761..142449,143198..143396,143519..143611,143889..144017,144107..144160,144236..144313,144722..144784,145727..145839,146361..146469)] [gbkey=CDS]
Sequence

ATGATGTCCACAGCAGCAGTTATTGGACTCAGTGCAGGAAAAAGACTCCTCAGCTCTTCC
TTCTATTATTCCGATCTTAATGAAAAGCTAACTTGTACCAGTGATCATAGTTTGCCTTGC
CATCACGTTCCTTCCATTAAGAATGTGATCACTGCGAAGAAGTCATCCGATTACAGCCCC
AGTTGTGTATCCAGTCGAAAATCACAATCCGCCAAGTCTCTTAAAGAGCATGTGGACATT
ACAGCCGACCCTTCTGATGTGCCGTCCTGGTTTGAAATGTATGAACAATTGCAAAATGAA
AGCGATGATGAGGACGAGTCGGTGGAGGTTCTCCTCTTGCTGCAGAAGTCTATGCTTGAA
AAGCAATGGAATCTTTCTCTTGAGCAGACATTGACAGCTTCTCCGCAACATGAAAAGAAA
AGTAAGAAGATGCATATTACTTGCTCAGGGACATCTGCTAGGCGGAGGAGAATGGATTCT
CGACAAAGAGTTCTTGATCGACATAGTTCAGCTACACCAACCAGTGCAGCGAAGCCACTG
AGATCAATTATTGGTCCAGAGCTACTTCAAAATCGTTTAAAAGGTTACGTTAAGGGTGTA
GTAAGCGAAGAACTGCTCACCCATGCTGAAGTGCTTCAACTATCCAAAAAAATTCAAGTT
GGCCTTTATTTGGAAGAGCAGAAATCCAGGCTTAAGGAAAGATTGGGATGCGAGCCTTCT
GATGATCAACTTGCTGTTTCCTTGAAAATGTCACGTACTGATCTACAATCTACATTGATT
GAGTGTTCCTTGGCAAGAGAAAGGCTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATT
GCTCAAAGATATGATAACGTGGGTGCTGAAATGGCTGACCTCGTTCAGGGAGGCCTTATT
GGGCTGCTTCGTGGGATAGAGAAATTTGATCCCTCTAAAGGATACAAAATCTCAACTTAT
GTTTATTGGTGGATTCGCCAGGGTGTCTCGAGAGCGCTGGTTGAGAATTCACGAACCTTA
AGATTGCCAACATATCTGCATGAAAGACTCAGTCTAATCCGTAATGCAAAGGCGAGACTT
GAAGAGAAGGGAATAACTCCATCTGTAAATAATATAGCTGCATCCCTAAATATGTCCCAG
AAGAAAGTCAGAAATGCAACTGAGGCAAGCAGCAAGATGTATTCACTTGACAGGGAAGCA
TTTCCCTCTTTAAATGGTCTCCCTGGAGAAACCCTTCATAGTTACATCGCTGATAACCAT
CTGGAGAACAACCCATGGCATGGTGTCGATGTATGGGCACTCAAGGATGAAGTAAACAAC
CTCATTTCATCAACTCTTAGGGACAGAGAGAGGGAGATTATCCGACTGTACTATGGTCTG
GACAATGAATGTCTCACCTGGGAGGATATTAGTAAAAGGATAGGTTTGTCCAGAGAAAGG
GTCAGACAGGTGGGATTAGTTGCACTTGAGAAACTAAAACATGCTGCAAGGAAAAGGCAA
CTAGACGCAATGTTGATCAAACAGTGA

Peptide Sequence

PEP ID

XP_016474122.1
PEP Infomation

PREDICTED: RNA polymerase sigma factor sigA-like [Nicotiana tabacum]
Sequence

MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP
SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE
KQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPL
RSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPS
DDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLI
GLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARL
EEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNH
LENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRER
VRQVGLVALEKLKHAARKRQLDAMLIKQ

Transcript Sequence

Gene sequence data has not been registered.